Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSAPVEALFQPFRLGALELPTRVVMAPMTRNFSP-GGVPNAKVVEYYRRRAAAGVGLIVSEGTTVGHKAANGYP-NVPRFYGEDALAGWKQVVDAVHAEGGRIVPQLWHVGSVRRLGVEP-DASVPGYGPMEKAKD---------GKVLVHGMSKADIQEVI-AAFAQAARDAQAIGMDGVEIHGAHGYLIDQFFWEGSNQRDDEYGGSLANRSRFAVELVRAVRAAVGADFPIIFRFSQWKQQDYSARL-----VETPEGLREFLAPLVE-----AGVDIFHCSTRRFWIPE----FEGSELN-LAGWTRELTGKPTITVGNVGL--DGSEFLQFFGKTDE--VAQPASIDGLVERLDKGEFDLVAVGRALLVDPEWAVKVREGRIGDIKPFSREALASLV |
| 3TJL Chain:A ((9-374)) | --LKDSEAFQSIKVGNNTLQTKIVYPPTTRFRALEDHTPSDLQLQYYGDRSTFPGTLLITEATFVSPQA-SGYEGAAPGIWTDKHAKAWKVITDKVHANGSFVSTQLIFLGRVADPAVMKTRGLNP-VSASATYESDAAKEAAEAVGNPVRALTTQEVKDLVYEAYTNAAQKAMDAGFDYIELHAAHGYLLDQFLQPCTNQRTDEYGGSIENRARLILELIDHLSTIVGAD-KIGIRISPWAT--FQNMKAHKDTVHPLTTFSYLVHELQQRADKGQGIAYISVVEPRVSGNVDVSEEDQAGDNEFVSKIW---KGVILKAGNYSYDAP------------EFKTLK--------EDIAD-KRTLVGFSRYFTSNPNLVWKLRDGI--DLVPYDRNTFYSDN |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TJL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -146589 for 2972 contacts (-49.3/contact) +
2D Compatibility (PS) -36593 + (NN) -18548 + (LL) 1284
1D Compatibility (HY) -18800 + (ID) 4600
Total energy: -223846.0 ( -75.32 by residue)
QMean score : 0.575
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