Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKQKRILVTGAGSGFGREVALRLAAR---GHRTIAGVRGAGQAADL---REEAGRRGVPLRVETLDITVAADRERAWE----WDIDVLLNNAGSAEAGASAEIPLELVRALFETNVFANLELTQGFVRRMVEQKRGGKVLFVSSIAGLITGPYTGPYCASKHALEAFAEALHAELKPFGIQVGTINPGPYQTGFNDRMMETWKRWYDPQ--------RHFTDHSGVRFPFEQYDPEEMIARMVELAEADEGPFRTLLPQAFVEVVKDEQAQAWQRRL |
| 1JTV Chain:A ((2-252)) | --RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG-SGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHT-------GSPEEVLDRTDIHTFHRFYQYLAHSKQVFREAAQNPEEVAEVFLTALRAPKPTLRYFTTERFLPLLRMRLDDPSGSNY |
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General information:
TITO was launched using:
| RESULT:
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Template: 1JTV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -67186 for 1779 contacts (-37.8/contact) +
2D Compatibility (PS) -24912 + (NN) -15015 + (LL) 692
1D Compatibility (HY) -15600 + (ID) 3250
Total energy: -125271.0 ( -70.42 by residue)
QMean score : 0.488
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