Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MKDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSV-KCCFDYLNNIIMMN-QNKSN--YSI-DALYQFLFEFIFDIEERYIRMYVQLSNTPEEFSGNIYGQIQDLNQSLSKEIAKFYDESKIKMTKEDFQNLILL--FLESWYLKASFSQKFGAVEESKS-QFKDEVYSL-LNIFLKK---
1ZKG Chain:A ((13-211))
VLSKRDAILKAAVEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFKNKEELYYQAYMSVTEKLQKEFENFLMKNRNRDIFDFMERWIEKKLEYSAS-HPEEADFLITLVSVDEGLRKRILLDLEKSQRVFFDFVREKLKDLDLAEDVTEEIALKFLMWFFSGFEEVYLRTYQGKPELLKRDMNTLVEEVKVMLRILKKGMTK
General information:
TITO was launched using:
RESULT:
Template:
1ZKG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59853 for 1221 contacts (-49.0/contact) +
2D Compatibility (PS) -19812 + (NN) -9179 + (LL) 204
1D Compatibility (HY) -7600 + (ID) 1450
Total energy: -97690.0 ( -80.01 by residue)
QMean score : 0.400
(partial model without unconserved sides chains):
PDB file :
Tito_1ZKG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZKG-query.scw
PDB file :
Tito_Scwrl_1ZKG.pdb
: