Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKSKIAKFQKQQKLVEQYAELRRELKEKG---------DYEALRKLPKDSNPNRLKNRDLIDGRPHAYMRKFGMSRINFRNLAYKGQIPGIKKASW
2YKR Chain:N ((1-100))
-AKQSMKAREVKRVALADKYFAKRAELKAIISDVNASRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKASW
General information:
TITO was launched using:
RESULT:
Template:
2YKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 9615 for 463 contacts (20.8/contact) +
2D Compatibility (PS) -9000 + (NN) -2461 + (LL) 208
1D Compatibility (HY) -3200 + (ID) 2100
Total energy: -6938.0 ( -14.98 by residue)
QMean score : 0.301
(partial model without unconserved sides chains):
PDB file :
Tito_2YKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YKR-query.scw
PDB file :
Tito_Scwrl_2YKR.pdb
: