Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCTMLAVMA-SGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDPDEQTIREAIS--GQICRCTGYTTIVRSIQWAAAHQTVKAQS
1DGJ Chain:A ((2-154))
ETKTLIVNGMARRLLVSPNDLLVDVLRSQLQLTSVKVGCGKGQCGACTVILDGKVVRACIIKMSRVAENASVTTLEGIGAP-DCLHPLQHAWIQHGAAQCGFCTPGFIVSAKALLDENVAPSREDVRDWFQKHHNICRCTGYKPLVDAVMDAAA--------
General information:
TITO was launched using:
RESULT:
Template:
1DGJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127961 for 1198 contacts (-106.8/contact) +
2D Compatibility (PS) -16017 + (NN) -3890 + (LL) 632
1D Compatibility (HY) -12400 + (ID) 2950
Total energy: -162586.0 ( -135.71 by residue)
QMean score : 0.525
(partial model without unconserved sides chains):
PDB file :
Tito_1DGJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DGJ-query.scw
PDB file :
Tito_Scwrl_1DGJ.pdb
: