Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHNDLKEVLLTEEDIQNICKELGAQLTKDYQ-------GKPLVCVGILKGSAMFMSDLIKRIDT---HLSIDFMDVSSYHGGTESTGEVQIIKDLGSSIENKDVLIIEDILETGTTLKSITELLQSRKVNSLEIVTLLDKPNRRKADIEAKYVGKKIPDEFVVGYGLDYRELYRNLPYIGTLKPEVYSN
1TC1 Chain:A ((4-187))
-YEFAEKILFTEEEIRTRIKEVAKRIADDYKGKGLRPYVNPLVLISVLKGSFMFTADLCRALCDFNVPVRMEFICVSSY---------VRMLLDTRHSIEGHHVLIVEDIVDTALTLNYLYHMYFTRRPASLKTVVLLDKREGRRVPFSADYVVANIPNAFVIGYGLDYDDTYRELRDIVVLRPE----
General information:
TITO was launched using:
RESULT:
Template:
1TC1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126439 for 1284 contacts (-98.5/contact) +
2D Compatibility (PS) -17449 + (NN) -1043 + (LL) 196
1D Compatibility (HY) -19600 + (ID) 3400
Total energy: -167735.0 ( -130.63 by residue)
QMean score : 0.580
(partial model without unconserved sides chains):
PDB file :
Tito_1TC1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TC1-query.scw
PDB file :
Tito_Scwrl_1TC1.pdb
: