Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKIGVCGPVGSGKTALIEALTRHMSK-DYDMAVITNDIYTKEDAEFMCKNSVMPRDRIIGVE----TGGCPHTAIREDASMNLEAVEEMHGR--FPNLELLLIESGGDNLSATFNPELADFTIFVIDVAEGDKIPRKGGPGITRSDLLVINKIDLAPYVG--ADLKVMERDSKKM-RGEKPFIFTNIRAKEGLDDVIAWIKRNALLED
2WWW Chain:A ((75-279))
-FRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDP----------------------TELSRDMNAYIRPS--------TRTTNEAILLCEGAGYDIILIETVGV--SEFAVADMVDMFVLLLPPA------------IEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLR-WKPKVIRISARSGEGISEMWDKMKDFQDLML
General information:
TITO was launched using:
RESULT:
Template:
2WWW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77423 for 1138 contacts (-68.0/contact) +
2D Compatibility (PS) -16166 + (NN) -6397 + (LL) 1928
1D Compatibility (HY) -6800 + (ID) 1600
Total energy: -106458.0 ( -93.55 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_2WWW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WWW-query.scw
PDB file :
Tito_Scwrl_2WWW.pdb
: