Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKVLIINGAKAFGHSGGKLNETLTHHAKKILESLGLEVDTTIVDKG--------------------YEKSQEVEKFFSADATIWQMPGWWMGEPWIVKKYIDEVFTSGHGKLYASDGRSSQNPTKNYGKGGLMQGKKYMLSLTWNAPIEAFNDPSEFFEGVGVDVVYLHLHKAFQFLGLSALPTFICNDVMKN--PQVEQYLNSLTVHLRQAFGK |
3LCM Chain:A ((1-188)) | -MKILIVYTHPN----PTSFNAEILKQVQTNLSK-EHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWADHLIFIFPIWWSGMPAILKGFIDRVFVADFAYSYKKV-----------GLEGHLQGKSAWIITTHNTPSFAMPF-----VQDY---GKVLKKQILKPCAISPVKLTELTSIEKISDDERQKLLHKVAQITRNILEH |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LCM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -72450 for 1249 contacts (-58.0/contact) +
2D Compatibility (PS) -17298 + (NN) -1010 + (LL) 768
1D Compatibility (HY) -4400 + (ID) 1800
Total energy: -96190.0 ( -77.01 by residue)
QMean score : 0.604
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