Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLEKVNEAVAKIRESYT--GTPKIGLILGSGLGVLADEVNQPIKLSYSEIPHFPVSTVEGHAGQFVFGELENKEVVAMQGRFHFYEGYSMQDVTFPVRVMKELGVEVLIVTNAAGGVNELYSAGDLMLISDHINFTGTSPLIGPNDEHFGPRFPDMSEAYNLALRVDARLIAQELNLTIREGVYAGFSGPTYETPAEIQMMRTLGADAVGMSTVPEVIIANHAGLRVLGISCITNMAAGILDQPLSHTEVIETTDQVRSTFLQYVKAIVAKIS
3ODG Chain:A ((16-285))
---ELPFQAVKYIQK-IKPGFKPQIAFILGSGLGDLVDQITNDTTISYADIPGFPVSSVHGHAGELVLGDLCGVPVMCMKGRGHFYEGKGMSIMTNPVRTFKLMGCEFLFCTNAAGSLRPEVLPGSVVMLKDHINTMPGTPLVGPNDDRFGPRFFSLANAYDKDLRADMAKIAQQLDIPLTEGVFVSYPGPCFETPAEIRMMQIIGGDVVGMSVVPEVLSAAHCGLKVIALTAITNLAEGLSDVVLSHEQTLKFAKVASVNFTKLIEAFLKSKA
General information:
TITO was launched using:
RESULT:
Template:
3ODG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -195955 for 2340 contacts (-83.7/contact) +
2D Compatibility (PS) -28658 + (NN) -11290 + (LL) 328
1D Compatibility (HY) -24400 + (ID) 5900
Total energy: -265875.0 ( -113.62 by residue)
QMean score : 0.588
(partial model without unconserved sides chains):
PDB file :
Tito_3ODG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ODG-query.scw
PDB file :
Tito_Scwrl_3ODG.pdb
: