Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LRRLDRFNAPDDTVNTLFQVYKTISFWKVLKNTLVIEFGRFFPWMGGKRKIYRVCLGMEIGEKTAIAYKVMPDLFFPEKILIGENSIIGYHTTILTHEYLLS-------EYRVGEVVIGRDVMVGANVTILPGTVIGDGAVIAAGAVVSVDVPAGSFAYGNPLIIKEKATLT
3SRT Chain:A ((75-186))
-------------------------------------------------------YNIHVGENFFANYDCIF--LDVCKIEIGDNVMLAPNVQIYTAYHPIDAQLRNSGIEYGSPVKIGDNVWIGGGVIITPGITIGDNVVIGAGSVVTKDIPPNTVAVGNPCRVIKKI---
General information:
TITO was launched using:
RESULT:
Template:
3SRT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91978 for 787 contacts (-116.9/contact) +
2D Compatibility (PS) -11609 + (NN) -2538 + (LL) 4588
1D Compatibility (HY) -7200 + (ID) 1750
Total energy: -110487.0 ( -140.39 by residue)
QMean score : 0.442
(partial model without unconserved sides chains):
PDB file :
Tito_3SRT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SRT-query.scw
PDB file :
Tito_Scwrl_3SRT.pdb
: