Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIIFAKEDDLEEII-SSHPKILLNFWAEWCAPCRCFWPTLEQFAEMEEGNVQVVKINVDKQRALAQKFDVKGIPNSLVLVDGEIKGAIAGIVSCDELRSRFKSLAK
2O8V Chain:B ((4-107))
--IIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL-
General information:
TITO was launched using:
RESULT:
Template:
2O8V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80000 for 751 contacts (-106.5/contact) +
2D Compatibility (PS) -10416 + (NN) 1971 + (LL) 416
1D Compatibility (HY) -6800 + (ID) 1550
Total energy: -96379.0 ( -128.33 by residue)
QMean score : 0.610
(partial model without unconserved sides chains):
PDB file :
Tito_2O8V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2O8V-query.scw
PDB file :
Tito_Scwrl_2O8V.pdb
: