Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGDLSISQVSARPGRIGIRARQMFDGYR-F-QRGPVLVVVEDGRISAVDFAGSA--CPDMNLVDLGESTLLPGLVDAHAHLCWDPDGRP------EDLA---GDP-------HAVLVGRARRHAAAALRSGITTIRDLGDRDYAALALREEYRQKTTVGPELVVSGPPLTRSGGHCWFLGGVADSVEELVDAVQERAARGADWIKVMATGGFVTTASDPW-QPQYGSGQLAAVVAAAEQVGLPVTAHAHATAG-------------IAAAVAAGV----DGIEHCTFLSEGSAAASPDVVEAIVAQGVWCGMTIPRVYPEMPENLVAVVQDGWRNIRRLIDAGARVALSTDAGVAPGRRHDVLPDDLVYLS---------RHGFTSTEVLTGATAAAAASCGLGHRKGRIAPGYDADLLAVAAGVDHDP------------AGLCDVKAVWRSGTQVPLQASAVGYNTPS |
4GBD Chain:A ((20-435)) | -----------NPFDLLLLPTWIVPVEPAGVVLRDHALGIRDGQIALVAPREQAMRHGATEIRELPGMLLAPGLVNAHGHSAMSLFRGLADDLPLMTWLQDHIWPAEGQWVSEDFIRDGTELAIAEQVKGGITCFSDMYFYP---QAICGVVH---DSGVRAQVAIPVLDFPIPGAR---DSAEAIRQGMALFDDLK--HHPRIRIAF---------GPHAPYTVSDDKLEQILVLTEELDASIQMHVHETAFEVEQAMERNGERPLARLHRLGLLGPRFQAVHMTQVDN-------DDLAMLVETNSSVIHCPESNLK---------LASGFCPVEKLWQAGVNVAIGTDGAASNN--DLDLLGETRTAALLAKAVYGQATALDAHRALRMATLNGARALGLERLIGSLEAGKAADLVAFDLSGLAQQPVYDPVSQLIYASGRDCVRHVWVGGRQLLDDGRLLR----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GBD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -177301 for 3247 contacts (-54.6/contact) +
2D Compatibility (PS) -39250 + (NN) -21467 + (LL) 3020
1D Compatibility (HY) -8000 + (ID) 3400
Total energy: -246398.0 ( -75.88 by residue)
QMean score : 0.389
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