Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLLSDRDLRAEISSGRLGIDPFDDTLVQPSSIDVRLDCLFRVFNNTRYTHIDPAKQQDELTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCMLRLTSPSEHPYGSSRAGSKYQGQRGPTPSRSYQNFIRST
4XJC Chain:A ((1-176))
MILSGKTISEKLTEKELEITPLTEEQIQPASVDLRLGPHFVTIDDSKEAVISFERP-I-RYREWTT-SDETIVLPPHTFLLATTMETVKLPNHLTAFVEGRSSVGRLGLFIQN-AGWVDPGFNGQITLELFNANRLPIELPIGRRICQLVFAEVTGEV-APYQ-----GKYLFQKGATMSEIYKDA----
General information:
TITO was launched using:
RESULT:
Template:
4XJC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79716 for 1268 contacts (-62.9/contact) +
2D Compatibility (PS) -19105 + (NN) -10222 + (LL) 916
1D Compatibility (HY) -14000 + (ID) 3250
Total energy: -125377.0 ( -98.88 by residue)
QMean score : 0.466
(partial model without unconserved sides chains):
PDB file :
Tito_4XJC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4XJC-query.scw
PDB file :
Tito_Scwrl_4XJC.pdb
: