Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSKRPLRWLTEQITLAGMRPPISPQLLINRPAMQPVDLTGKRILLTGASSGIGAAATKQFGLHRAVVVAVARRKDLLDAVADRITGDGGTAMSLPCDLSDMEAIDALVEDVEKRIGGIDILINNAGRSIRRPLAESLERWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVLSEASPLFSVYNASKAALSAVSRIIETEWGS---QGVHSTTLYYPLVATPMIAPTKAYDGLPALTAAEAAEWMVTAARTRPVRIA-PRVAVAVNALDSIGPRWVNALMQRRNEQLNP |
1YB1 Chain:A ((25-268)) | ---------------------------------RRKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFAT--QDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAA-HVS-VPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNPST-SLGPTLEPEEVVNRLMHGILTEQKMIFIPSSIAFLTTLERIL----------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YB1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -129138 for 1994 contacts (-64.8/contact) +
2D Compatibility (PS) -25934 + (NN) -12750 + (LL) 4348
1D Compatibility (HY) -11600 + (ID) 3100
Total energy: -178174.0 ( -89.36 by residue)
QMean score : 0.540
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