Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPYEDLLRFVLETGTPKSDRTGTGTRSLFGQQMRYDLSAGFPLLTTKKVHFKSVAYELLWFLRGDSNIGWLHEHGVTIWDEWASDTGELGPIYGVQWRSWPAPS--------GEHIDQISAALDLLRTDPDSRRIIVSAWNVGEIERMALPPCHAFFQFYVADGRLSCQLYQRSADLFLGVPFNIASYALLTHMMAAQAGLSVGEFIWTGGDCHIYDNHVEQVRLQLSREPRPYPKLLLADR-DSIFEYTYEDIVVKNYDPHPAIKAPVAV
4XSC Chain:A ((34-309))
ELQYLKQVDDILRYGVRKRDRTGIGTLSLFGMQARYNLRNEFPLLTTKRVFWRAVVEELLWFIRGSTDSKELAAKDIHIWD-----TGDLGPIYGFQWRHFGAEYKDCQSNYLQQGIDQLQTVIDTIKTNPESRRMIISSWNPKDIPLMVLPPCHTLCQFYVANGELSCQVYQRSGDMGLGVPFNIAGYALLTYIVAHVTGLKTGDLIHTMGDAHIYLNHIDALKVQLARSPKPFPCLKIIRNVTDINDFKWDDFQLDGYNPHP--------
General information:
TITO was launched using:
RESULT:
Template:
4XSC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -181575 for 1973 contacts (-92.0/contact) +
2D Compatibility (PS) -27032 + (NN) -16680 + (LL) 1244
1D Compatibility (HY) -24800 + (ID) 6200
Total energy: -255043.0 ( -129.27 by residue)
QMean score : 0.560
(partial model without unconserved sides chains):
PDB file :
Tito_4XSC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4XSC-query.scw
PDB file :
Tito_Scwrl_4XSC.pdb
: