Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQPMTARFDLFVVGSGFFGLTIAERVATQL-DKRVLVLERRPHIGGNAYSEAEPQTGIE-VHKYGAHLFHTSNKRVWDYVRQFTDFTDYRHRVFAMHNGQAYQFPMGLGLVSQFFGKYFTPEQARQLIAEQAAEIDTADAQNLEEKAISLIGRPLYEAFVKGYTAKQWQTDPKELPAANITRLPVRYTFDNRYFSDTYEGLPTDGYTAWLQNMAADHRIEVRLNTDWFDVRGQLRPGSPAAPVVYTGPLDRYFDYAEGRLGWRTLDFEVEVLPIGDFQGTAVMNYNDLDVPYTRIHEFRHFHPERDYPTDKTVIMREYSRFAEDDDEPYYPINTEADRALLATYRARAKS-ETASSKVLFGGRLGTYQYLDMHMAIASALNMYDNVLAPHLRDGVPLLQDGA |
| 1V0J Chain:A ((4-395)) | ---MTARFDLFVVGSGFFGLTIAERVAT-QLDKRVLVLERRPHIGGNAYSEAEP-QTGIEVHKYGAHLFHTSNKRVWDYVRQFTDFTDYRHRVFAMHNGQAYQFPMGLGLVSQFFGKYFTPEQARQLIAEQAAEIDTAD----EEKAISLIGRPLYEAFVKGYTAKQWQTDPKELPAANITRLPVRYTFDNRYFSDTYEGLPTDGYTAWLQNMAADHRIEVRLNTDWFDVRGQLRPGSPAAPVVYTGPLDRYFDYAEGRLGWRTLDFEVEVLPIGDFQGTAVMNYNDLDVPYTRIHEFRHFHPERDYPTDKTVIMREYSRFAEDDDEPYYPINTEADRALLATYRARAKSET-ASSKVLFGGRLGTYQYLDMHMAIASALNMYDNVLAPHLRDGVPLL---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1V0J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -193826 for 3098 contacts (-62.6/contact) +
2D Compatibility (PS) -41446 + (NN) -22294 + (LL) 856
1D Compatibility (HY) -51200 + (ID) 18950
Total energy: -326860.0 ( -105.51 by residue)
QMean score : 0.592
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