Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTRRTAFFFDELCLWHAAGPHALTLPVGGWVQPPAAAGHAESPETKRRLKSLLDVSGLTARLQLRSAPPASDEDLLRVHPAHYLERFKALSDAG-G----------------G-SLGQDAPIG-PGSYEIARLSAGLAIAALDAVLAGEADNAYSLSRPPGHHCLPDQAMGFCFFANIAVAIEAAKARHGVERVAVLDWDVHHGNGTQAIYYRRDDVLSISLHQDG---CFPPGYSGAEDIGEDRGRGFNLNVPLL----PGGGHDAYMQAMQRIVLPALERFRPQLIVVASGFDANAVD--PLARMQLHSDSFRAMTAMVRDAAERHAGGRLVVVHEGGYSEAYVPFCGLAVIEELSGVRSAVRDPLRDFIELQQPNAAFRDFQRQRLEELAAQFGLCPAQPLQAAR |
| 2VQM Chain:A ((7-385)) | -RFTTGLVYDTLMLKHQCTCG--------------------HAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKKLLGSLASVFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFP-GSGAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSARCFGYLTKQLMGL----AGGRIVLALEGGHDLTAICDASEACVSALLGNELD---PLPEKVLQQRPNANAVRSMEKVMEIHSKYWR----------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VQM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -204095 for 3131 contacts (-65.2/contact) +
2D Compatibility (PS) -37152 + (NN) -18495 + (LL) 2572
1D Compatibility (HY) -18800 + (ID) 5200
Total energy: -281170.0 ( -89.80 by residue)
QMean score : 0.552
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