Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGKRIGLFGGTFDPVHIGHMRSAVEMAEQFALDELRLLPNARPPHRETPQVSAAQRLAMVERAVAGVERLTVDPRELQRDKPSYTIDTLESVRAELAADDQLFMLIGWDAFCGLPTWHRWEALLDHCHIVVLQRPDADSEPPESLRDLLAARSVADPQALKGPGGQITFVWQTPLAVSATQIRALLGAGRSVRFLVPDAVLNYIEAHHLYRAPH
1KAM Chain:A ((1-189))
-SKKIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPD--------SFHRVEMLKLAIQSNPSFKLELVEMEREGPSYTFDTVSLLKQRYP-NDQLFFIIGADMIEYLPKWYKLDELLNLIQFIGVKRPGFHVETPYP----------------------LLFADVPEFEVSSTMIRERFKSKKPTDYLIPDKVKKYVEENGLYES--
General information:
TITO was launched using:
RESULT:
Template:
1KAM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134108 for 1340 contacts (-100.1/contact) +
2D Compatibility (PS) -19862 + (NN) -12821 + (LL) 1700
1D Compatibility (HY) -15200 + (ID) 3150
Total energy: -183441.0 ( -136.90 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_1KAM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KAM-query.scw
PDB file :
Tito_Scwrl_1KAM.pdb
: