Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRRPLVAGNWKMHGTHSSVAELIKGLRQLALPSGVDVAVMPPCLFISQVIQGLAGKAIDVGAQNSAVEPMQGALTGETAPSQLADVGCSMVLVGHSERRLILGESDEVVSRKFAAAQSCGLVPVLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAIGTGLTASPAQAQEVHAAIRAQLAAENAE-VAKGVRLLYGGSVKAASAAELFGMPDIDGGLVGGASLNADEFGAICRAAGS
2J27 Chain:A ((3-249))
KPQPIAAANWKCNGSQQSLSELIDLFNSTSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAI-A-KSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEAVWAIGTGKVATPQQAQEAHALIRSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLKPE-FVDIIKAT--
General information:
TITO was launched using:
RESULT:
Template:
2J27.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -165449 for 2121 contacts (-78.0/contact) +
2D Compatibility (PS) -26658 + (NN) -9550 + (LL) -44
1D Compatibility (HY) -18800 + (ID) 4850
Total energy: -225351.0 ( -106.25 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_2J27.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J27-query.scw
PDB file :
Tito_Scwrl_2J27.pdb
: