Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSGNRGVVYLGPG-KVEVQNIPYPKMQDPQGRQIDHGVILRVVSTNICGSDQHMVRGRTT----APEGLVLGHEITGEVVEIGRGVETMKIGDLVSVPFNVACGHCRTCKEQHTGVCLTVNPARAGGAYGYVDMGGWVGGQAEYVLVPYADFNLLKLPNREAAMEKIRDLTCLSDILPTGYHGAVTAGVGPGSTVYIAGAGPVGLAAAASARLLGAAVVIVGDVNPTRLAHAKKQGFEIADLSKDTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHSGSQQEAPATVLNSLMGITRVAGKIGIPGLYVTEDPGAVDAAAKHGALSIRFG-LGWAKSHSFHTGQT-PVMKYNRQLMQAIMWDRIKIADIVGVEVI-TLDDAPKGYGEFDAGVPKKFVIDPHNLFRAA |
| 2D8A Chain:A ((3-347)) | -EKMVAIMKTKPGYGAELVEVDVPKPG-P------GEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCY------------TK------IFGV----DTDGVFAEYAVVPAQ--NIWKNPKSIP----PEYA-TLQEPLGNAVDTVL-AGPISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGAPK---------------ALEQGLQAVTPAGRVSLLGLYPGKVT-------------IDFNNLIIFKALTIYGITGRHLWETWYTVSRLLQSGKLNL-DPIITHKYKGFDKYEEAFELMRAGKTGKVVFML------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2D8A.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -187373 for 2859 contacts (-65.5/contact) +
2D Compatibility (PS) -34669 + (NN) -6317 + (LL) 3672
1D Compatibility (HY) -16000 + (ID) 4450
Total energy: -245137.0 ( -85.74 by residue)
QMean score : 0.610
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