Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQKVVIIGGGIVGASAAYLLSKENVQVTLIDSDEA-GQATRAAAGIICPWLSKRRNKYWYELAKNSAAFYKELAETLEGDTGRDSGYKQVGVLALRQTEEKLAELFNLARERRLDAEVMGEVAKLSEAETKQRFPLVKS--GFGSVYVSGAARVNGGLFCETLLYAAKENGVKIKAGRAH--FSSDGE--VVI-D-GEKEHYDKLILATGAWLKDLLQDAGF--QTDVLAQKGQLLELNFSEFQTDDWPV-ILPPS-AKSIVPFDNGKIIVGATHEKAAGFNTEPTAEGKAEILTEVSQFMEGDLASKVAHVSVGTRPYTPDFTPIIGQLPGFESVFLANGLGASGLTTGPYVGRILADLALGNASDFVLENYEPSKYISR |
| 1Y56 Chain:B ((5-371)) | KSEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRFIGSGSTFRCGTGIRQQFND---EANVRVMKRSVELWKKYS----EEYG--FSFKQTGYLFLLYDDEEVKTFKRNIEIQNKFG---VPTKLITPEEAKEIVPLLDISEVIAASWNPTDGKADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKGIIKTGIVVNATNAWANLINAMAGIKTKIPIEPYKHQAVITQPIKRG-TINPMVISFKYGHAYLTQTFHGGIIGGIGYEIGPTYDLTPTYEFLREVSYYFTKIIPALKNLLILRTWAGYYAKTPDSNPAIGRIEELNDYYIAAGFSGHGFMMAPAVGEMVAELITKGKTKLPVEWYDPYRFER- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1Y56.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -158684 for 3152 contacts (-50.3/contact) +
2D Compatibility (PS) -38453 + (NN) -14984 + (LL) 1236
1D Compatibility (HY) -7600 + (ID) 3650
Total energy: -222135.0 ( -70.47 by residue)
QMean score : 0.442
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