Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNPTFGEKIDNVDYRSRFGVYAIIPNPTHDKIILVQAPNGAWFLPGGEIEENENHLEALTRELIEELGYSATIGHYYGQADEYFYSRHRDTYYYNPAYIYEVTAYHKEQAPLEDFNHLAWFPIQEAKEKLKRGSHRWGVQAWEKNHHSRK
1VCD Chain:A ((3-124))
------------------LGAGGVVFNA-KREVLLLRDRMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNP-----KGVEREVHWFLMRGEGA-PRLEEGMTGAGWFSPEEARALLAFPEDLGLLEVALERLPL--
General information:
TITO was launched using:
RESULT:
Template:
1VCD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65420 for 931 contacts (-70.3/contact) +
2D Compatibility (PS) -13492 + (NN) -3767 + (LL) 960
1D Compatibility (HY) -2800 + (ID) 1150
Total energy: -85669.0 ( -92.02 by residue)
QMean score : 0.486
(partial model without unconserved sides chains):
PDB file :
Tito_1VCD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VCD-query.scw
PDB file :
Tito_Scwrl_1VCD.pdb
: