Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPELPEVEIISNFLFDKIKNKQISGVTVNNWNLRV-PI-TQNIDDVIKGKVINNIKRRGKYIIWHIDNDIVVTVHLGMSGKLIYAKGEQAQNKHDHVIFSFSDNTSIIFNDPRKFGLVIILNKE--QEVNFFNDFGIEPFTDEFNGDYLQKLLKSKKVNIKSALMNNKLIVGIGNIYASESLFRARISPLRSAQDLTYKECEKLATEIKNTLSDAIIAGGSTLKDYAQPSGSVGYFQNSFYVYGKVQKPCKICNNTITLIRQNGRSTYFCNACQN
3U6P Chain:A ((1-273))
-PQLPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKFLKFLLDR-DALISHLRMEGRYAVASALEPLEPHTHVVFCFTDGSELRYRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVM---------------------HLYVYGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQR
General information:
TITO was launched using:
RESULT:
Template:
3U6P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145775 for 1962 contacts (-74.3/contact) +
2D Compatibility (PS) -27026 + (NN) -13004 + (LL) 392
1D Compatibility (HY) -15200 + (ID) 4200
Total energy: -204813.0 ( -104.39 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_3U6P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U6P-query.scw
PDB file :
Tito_Scwrl_3U6P.pdb
: