Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTKSVAIIGAGITGLSSAYFLKQQDPNIDVTIFEASNRPGGKIQSYRKDGYMIELGPESYLG--RKTIMTELAKDIGLEQDIVTNTTGQSYIFAKNKLYPIPGGSIMGIPTDIKPFVTTKLISPLGKLRAGLDL--IKKPIQMQDGDISVGAFFRARLGN-EVLENLIEPLMGGIYGTDIDKLSLMSTFPNFKEKEEAFGSLIKGMKDEKNKRLKQRQLYPGAPKGQFKQFKHGLSSFIEALEQDVKNKGVTIRYNTSVDDIITSQKQYKIVYSNQQEDVFDGVLVTTPHQVFLNWFGQ--DP-AF-DYFKTMDSTTVATVVLAFDEKDIENTYDGTGFVIARTSDTDITACTWTSKKWPFTTPEGKVLIRAYVGKPGDTVVDDHTDNELVSIVRRDLSQMMTFKGDPEFTIVNRLPKSMPQYHVGHIQQIRQIQAHIKQTYPRLRVTGASFE-AVG--LPDCITQGKVAAEEVIAEL |
| 3NRN Chain:A ((1-406)) | --MRAVVVGAGLGGLLAGAFLARN--GHEIIVLEKSAMIGGRFTNLPYKGFQLSTGALHMIPHGEDGPLAHLLRILGAKVEIVNSNP-KGKILWEGKIFHYRE--------SW-K-----FLS--------KLLAEIRMNK-LPKEEIPADEWIKEKIGENEFLLSVLESFAGWADSVSLSDLTALELAKEIRA-----------A----L------------RWGGPGLIRGGCKAVIDELERIIMENKGKILTRKEVVEINIEEKK--VYTRDNEEYSFDVAISNVGVRETVKLIGRDYFDRDYLKQVDSIEPSEGIKFNLAVPGEPRI---G-NTIVFTPG--LMINGFNEPSALDKSLAREGYTLIMAHMALKNG------NVKKAIEKGWEELLEIFPEG-EPLLAQVY-------------HI--------EW-PLNEVLVVGDGYRPPGGIEVDGIALGVMKALEKLNLG- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NRN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -176607 for 3201 contacts (-55.2/contact) +
2D Compatibility (PS) -40861 + (NN) -25879 + (LL) 4512
1D Compatibility (HY) -16000 + (ID) 3000
Total energy: -257835.0 ( -80.55 by residue)
QMean score : 0.434
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