Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKIGVCGPVGSGKTALIEALTRHMSKDYDMAVITNDIYTKEDAEFMCKNSVMPRDRIIGVETGGCPHTAIREDASMNLEAVEEMHGRFPNLELLLIESGGDNLSATFNPELADFTIFVIDVAEGDKIPR----KGGPGITRSDLLVINKIDLAPYVGADLKVMERDSKKM---RGEKPFIFTNIRAKEGLDDVIAWIKRNALLED
1MKY Chain:A ((181-355))
-IKVAIVGRPNVGKSTLFNAILNKERA-----LVSPIP------VDD--EVFIDGRKYVFVDTAGL----------------EKYSNY----------------RVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYT
General information:
TITO was launched using:
RESULT:
Template:
1MKY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48579 for 1164 contacts (-41.7/contact) +
2D Compatibility (PS) -16043 + (NN) -2891 + (LL) 2968
1D Compatibility (HY) -7200 + (ID) 1400
Total energy: -73145.0 ( -62.84 by residue)
QMean score : 0.450
(partial model without unconserved sides chains):
PDB file :
Tito_1MKY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MKY-query.scw
PDB file :
Tito_Scwrl_1MKY.pdb
: