Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIAMANFKSAMPVFKSHAYLKELEKTLKPQHFDRVFVFPDFLGLLPNAF----LHFTLGAQNAYPRDCGAFTGEITSKHLEELKIHTLLIGHSERRVLLKESPSFLKEKFDFFKGKNFKIVYCIGEDLTTREKGFRAVKEFLSEQLE-----NIDLNYSNLIVAYEPIWAIGTKKSASLEDIYLTHGFLKQIL--------NQKTPLLYGGSVNAQNAKEILGIDSVDGLLIGSASLELENFKTIISFL
2J27 Chain:A ((4-249))
PQPIAAANWKCNGSQQSLSELIDLFNSTSI-NHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAI-AKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGETLQERESGRT--AVVVLTQIAAIAKKLKKADWAKVVIAYEAVWAIGTGKVATPQQAQEAHALIRSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLKPE-FVDIIKAT
General information:
TITO was launched using:
RESULT:
Template:
2J27.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137726 for 1912 contacts (-72.0/contact) +
2D Compatibility (PS) -24116 + (NN) -5609 + (LL) -24
1D Compatibility (HY) -14000 + (ID) 3550
Total energy: -185025.0 ( -96.77 by residue)
QMean score : 0.439
(partial model without unconserved sides chains):
PDB file :
Tito_2J27.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J27-query.scw
PDB file :
Tito_Scwrl_2J27.pdb
: