Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQMDAHQIISFIQNSKKATPVKVYLKGDLEKIDFPSDVKTFITGNAGTVFGEWAVVEPLLEANKANIEDYVIENDRRNSAIPLLDMKNINARIEPGAVIRDQVTIGDNAVIMMGASINIG---SVIGDGTMIDMNVVLGGRA-----TVGKNCHIGAGSVLAGVVEPPSAQPVIVEDNVVVGANVVVLEGVRIGEGAVVAAGAIVT--KDVAPGTVVAGIPARELKKLDAKTASKTEIMQELRQL
1XHD Chain:A ((17-149))
-----------------------------------------------------------------------------------------SSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLH-QSPQYPLILEDDVTVGHQVILHS---------CHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNTLAFGRPAKVIRELTAE--------------
General information:
TITO was launched using:
RESULT:
Template:
1XHD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -149529 for 974 contacts (-153.5/contact) +
2D Compatibility (PS) -14188 + (NN) -5595 + (LL) 7860
1D Compatibility (HY) -8400 + (ID) 1600
Total energy: -171452.0 ( -176.03 by residue)
QMean score : 0.613
(partial model without unconserved sides chains):
PDB file :
Tito_1XHD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XHD-query.scw
PDB file :
Tito_Scwrl_1XHD.pdb
: