Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDTMILNDNHKIPTLGLGTWMINNDRVAQVVKDAIELGYRHINTAQAYNNEKGVGVGIKESGITRESLFVTTKIAAEHKNYESATKSIDQSLEALGLDCIDLMIIHSPQPWK-----EWRETDKHFDQGNL
3WBW Chain:A ((13-140))
AQTVISFHDGHTMPQIGLGVWETPPDETAEVVKEAVKLGYRSVDTARLYKNEEGVGKGLED----HPEIFLTTKLWNDEQGYDSTLRAYEESARLLRRPVLDLYLIHWPMPAQGQYVETWKALVELKKSGRV
General information:
TITO was launched using:
RESULT:
Template:
3WBW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23051 for 880 contacts (-26.2/contact) +
2D Compatibility (PS) -12914 + (NN) -1973 + (LL) 56
1D Compatibility (HY) -8000 + (ID) 2100
Total energy: -47982.0 ( -54.52 by residue)
QMean score : 0.422
(partial model without unconserved sides chains):
PDB file :
Tito_3WBW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3WBW-query.scw
PDB file :
Tito_Scwrl_3WBW.pdb
: