Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAIDKLVKASHLIDMNDIIREGNPTLRKVAEEVT-FP-LSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKNPFAVKEGLLILE
1Y6H Chain:A ((1-171))
--------------SVRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMR------------HAEGVGLAAPQIGILKQIVVVGSEDNER----YPGTPDVPERIILNPVITPLTKDT--SGFWEGCLSVPG-MRGYVERPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTKLFGFNETLDSSH
General information:
TITO was launched using:
RESULT:
Template:
1Y6H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47294 for 1292 contacts (-36.6/contact) +
2D Compatibility (PS) -18192 + (NN) -6524 + (LL) 2540
1D Compatibility (HY) -11600 + (ID) 2800
Total energy: -83870.0 ( -64.91 by residue)
QMean score : 0.343
(partial model without unconserved sides chains):
PDB file :
Tito_1Y6H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y6H-query.scw
PDB file :
Tito_Scwrl_1Y6H.pdb
: