Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTIQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL--KNKPRIMLLNKADKADAAV---TQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIA----KTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYGLDEIPEDIAELFDAIGEKRGCLMSGGLINYDKTTEVIIRDIRTEKFGRLSFEQPTM
2YV5 Chain:A ((75-231))------------------PKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLE------------------GFICILAGPSGVGKSSILSRLTGEELRTQEV-------TTTGVRLIPFGKGSFVGDTPGFSKVEA------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 2YV5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 660 -82860 -125.54 -604.81
target 2D structure prediction score : 0.60
Monomeric hydrophicity matching model chain A : 0.62

3D Compatibility (PKB) : -125.54
2D Compatibility (Sec. Struct. Predict.) : 0.60
1D Compatibility (Hydrophobicity) : 0.62
QMean score : 0.580

(partial model without unconserved sides chains):
PDB file : Tito_2YV5.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2YV5-query.scw
PDB file : Tito_Scwrl_2YV5.pdb: