Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMRIFKKAVFVIMISFLIATVNVNTAHAAIDVSAKSAIIIDGASGRVLYAKDEHQKRRIASITKIMTAVLAIES---G--KMDQTVTVSANAVRT---EGSAIYLTEGQKVKLKDLVYGLMLRSGNDAAVAIAEHVGGSLDGFVYMMNQKAEQLGMKNTRFQNPHGLDDHENHYSTAYDMAILTKYAMK-LKDYQKISGTKIYKAETMESVWKNKNKLLTMLYPYSTGGKTGYTKLAKRTLVSTAS-KDGIDLIAVTINDPN---DWDDHMKMFNYVFEHYQTYLIAKKGDIPKLK----GTFYESKAFIKRDITYLLTEEEKENVKINTTL-LKPKKAWEKDASKIPDIVGHMEIMFNDATIAKVPIYYENERHQKPKKQFFETFKSIFLNAAGGAKWSI
3A3J Chain:A ((3-343))--------------------------TPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDD-PNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNK--IKQPNRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGKEISEQRVYYGDKNSVKLGAFMDHFITIPKGKQSEVKARYELADKNLQA----PLAKGQVIGKVVYALDGKDIASANLQVMNDVG--------------------------


General information:
TITO was launched using:
RESULT:

Template: 3A3J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1785 78946 44.23 244.41
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain A : 0.69

3D Compatibility (PKB) : 44.23
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.69
QMean score : 0.513

(partial model without unconserved sides chains):
PDB file : Tito_3A3J.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3A3J-query.scw
PDB file : Tito_Scwrl_3A3J.pdb: