Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAPTDRRVRADAARNRARVLEVAYQTFAADGL-SVPVDEIARRAGVGAGTVYRHFPTKEALFQAVIADRMHRIIDKGHALLKSKHPGDALFAFLRSMVLQWGATD--RGLVEALA---GVGIEISSAAPEAEADFLDLLTDLLRAAQRAGTVRPDVDVLEVKTLLVGCQAMQ----SYNAELAAKVTDVALDGLRANRK
1JT6 Chain:A ((2-187))
-------------NLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQIKAKTNREKFYLYNELSLTTEYYYPLQNAIIEFYTEYYKTNSINEKMNKLENKYIDAYHVIFKEGNLNGEWSINDVNAVSKIAANAVNGIVTFTHEQNINERIKLMNKFSQIFLNGLS
General information:
TITO was launched using:
RESULT:
Template:
1JT6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78491 for 1217 contacts (-64.5/contact) +
2D Compatibility (PS) -19954 + (NN) -16339 + (LL) 1036
1D Compatibility (HY) -2400 + (ID) 1250
Total energy: -117398.0 ( -96.47 by residue)
QMean score : 0.566
(partial model without unconserved sides chains):
PDB file :
Tito_1JT6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JT6-query.scw
PDB file :
Tito_Scwrl_1JT6.pdb
: