Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSAESAQREIALWFPGA
1NHK Chain:R ((2-134))
-IERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDLVQFMISGPVVLMVLEGENAVLANRDIMGATNPAQ-AAEGTIRKDFATSIDKNTVHGSDSLENAKIEIAYFFRE-
General information:
TITO was launched using:
RESULT:
Template:
1NHK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74406 for 1023 contacts (-72.7/contact) +
2D Compatibility (PS) -14460 + (NN) -5823 + (LL) 496
1D Compatibility (HY) -10000 + (ID) 3400
Total energy: -107593.0 ( -105.17 by residue)
QMean score : 0.574
(partial model without unconserved sides chains):
PDB file :
Tito_1NHK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NHK-query.scw
PDB file :
Tito_Scwrl_1NHK.pdb
: