Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVFQHDIYAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAPRHPRIRREELDITDSQRLQRLFEAL----PRLDVLVNNAGISRD--REEYDLATFERVLRLNLSAAMLASQLARPLLAQ-RGGSILNIASMYSTFGSADRPAYSASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLKADVEATRRIMQRTPLARWGEAPEVASAAAFLCGPGASFVTGAVLAVDGGYLCA
2D1Y Chain:A ((2-247))
-----GLFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIA----RRDWEDLHALRRLGKPEEVAEAVLFLASEKASFITGAILPVDGGMTA-
General information:
TITO was launched using:
RESULT:
Template:
2D1Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140197 for 2040 contacts (-68.7/contact) +
2D Compatibility (PS) -24846 + (NN) -10432 + (LL) 1204
1D Compatibility (HY) -16400 + (ID) 4950
Total energy: -195621.0 ( -95.89 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_2D1Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2D1Y-query.scw
PDB file :
Tito_Scwrl_2D1Y.pdb
: