Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSGNRGVVYLGPG-KVEVQNIPYPKMQDPQGRQIDHGVILRVVSTNICGSDQHMVRGRT---TAPEGLVLGHEITGEVVEIGRGVETMKIGDLVSVPFNVACGHCRTCKEQHTGVCLTVNPARAGGAYGYVDM-GGWVGGQAEYVLVPYADFNLLKLPNREAAMEKIRDLTCLSDILPTGYHGAVTA--GVGPGSTVYIAGAGPVGLAAAASARLLGAAVVIVGDVNPTRLAHAKKQGFEIADLSKDTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHSGSQQEAPATVLNSLMGITRVAGKIGIPGLYVTEDPGAVDAAAKHGALSIRFGLGWAKSHSFHTGQTPVMKYNRQLMQAIMWDRIKIADIVGVEVITLDDAPKGYGEFDAGVP-KKFVIDPHNLFRAA |
| 3JV7 Chain:A ((1-345)) | ---MKAVQYTEIGSEPVVVDIPTPTPG-P------GEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRAAD------LGITPPGLGSPGSMAEYMIVDSAR-HLVPIG-DLD----PVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGA-GAADAIRELTGGQGATAVFDFVGAQS---------------TIDTAQQVVAVDGHISVVGIHAGAHA------------KVGFFMI-PFGASVVTPYWGTRSELMEVVALARAGRLD-I---HTETFTLDEGPAAYRRLREGSIRGRGVVVP------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3JV7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -186675 for 3068 contacts (-60.8/contact) +
2D Compatibility (PS) -36370 + (NN) -7763 + (LL) 3316
1D Compatibility (HY) -7200 + (ID) 4550
Total energy: -239242.0 ( -77.98 by residue)
QMean score : 0.610
|
|
|