Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQKVVIIGGGIVGASAAYLLSKE-NV-QVTLIDSDEA-GQATRAAAGIICPWLSKRRNKYWYELAKNSAAFYKELAETLEGDTGRDSGYKQVGVLALRQTEEKLAELFNLARERRLDAEVMGEVAKLSEAETKQRFPLVKS-------GFGSVYVSGAARVNGGLFCETLLYAAKENGVKIKAGRAH--FSSDGE--VVI-D-GEKEHYDKLILATGAWLKDLLQDAGFQTDVLAQKGQLLELNFSEFQTDDWPV-ILPPS-AKSIVPFDNGKIIVGATHEKAAGFNTEPTAEGKAEILTEVSQFMEGDLASKVAHVSVGTRPYTPDFTPIIGQLPGFESVFLANGLGASGLTTGPYVGRILADLALGNASDFVLENYEPSKYISR |
| 2GAG Chain:B ((21-391)) | SYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLAGGNMARNTTIIRSNYLW---DESAGIYEKSLKLWEQLP----EDLEYDFLFSQRGVLNLAHTLGDVRESVRRVEANKLNG---VDAEWLDPSQVKEACPIINTSDDIRYPVMGATWQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRGTIHAGKVALAGAGHSSVLAEMAGFELPIQSHPLQALVSELFEP---VHPTVVMSNHIHVYVSQAHKGELVMGAGIDSYNGYGQRGAFHVIQEQMAAAVELFPIFARAHVLRTWGGIVDTTMDASPIISKTP-IQNLYVNCGWGTGGFKGTPGAGFTLAHTIANDEPHELNKPFSLERFET- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GAG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -169372 for 3197 contacts (-53.0/contact) +
2D Compatibility (PS) -38553 + (NN) -13992 + (LL) 1084
1D Compatibility (HY) -6000 + (ID) 3550
Total energy: -230383.0 ( -72.06 by residue)
QMean score : 0.476
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