Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MEREYMEFDVVIVGAGPAGLSAACRLKQKAAEAGQEISVCVVEKGSEVGAHILSGAVFEPRALNELFPDWKELGAPLNTPVTGDDIYVLKSAESATKVPNFFVPKTMHNEGNYIISLGNLCRWLAQQAEGLGVEIYPGFAAQEALIDENGVVRGIVTGDLGVDREGNPKEGYYTPGMELRAKYTLFAEGCRGHIGKQLIKKYNLDSEADAQHYGIGIKEIWDIDPSKHKPGLVVHTAGWPLNDENTGGSFLYHLENNQVFVGLIIDLSYSNPHLSPFDEFQRY-KHHPVVKQYLEGGKRVAYGARAICKGGLNSLPKMVFPGGALIGCDLGTLNFAKIKGSHTAMKSGMLAADAIAEALAAGREGGDELSSYVDAFKASWLYDELFRSRNFGAAIHKFGAIGGGAFNFIDQNIFGGKIPVTLHDDKPDYACLKKASEAPKIDYPKPDGKLSFDKLSSVFLSNTNHEEDQPIHLKLADASIPIEKNLPLYDEPAQRYCPAGVYEVVANDDGSKRFQINAQNCVHCKTCDIKDPAQNITWVAPEGTGGPNYPNM |
3OZ2 Chain:A ((2-350)) | ----METYDVLVVGGGPGGSTAARYAAKY------GLKTLMIEKRPEIGSPVRCGEGLSKGILNEAD--IKADRSFIANEVKGARIYGPSEKRPI----ILQ-SEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKEN-GKVAGAKIRH-----N--------NEIVDVRAKMVIAADGFESEFGRWAGLKSVIL---ARNDIISALQYRMINVD--VDPDYTDFYLGS-I--APAGYIWVFPKGEGMANVGIGSSINWIHNRFELKNYLDRFIENHPGLKK----GQDIQLVTGGVSVSKV--KMPITMPGLMLVGDAARLIDPITGGGIANAIVSGMYAAQVTKEAIESNDYSPQMMQKYEKLIKER-FERKHLRNWVAKEKL------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3OZ2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -174273 for 3145 contacts (-55.4/contact) +
2D Compatibility (PS) -36574 + (NN) -7964 + (LL) 7304
1D Compatibility (HY) -7200 + (ID) 3300
Total energy: -222007.0 ( -70.59 by residue)
QMean score : 0.469
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