Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPLLILTFVAAALAAPFDDDDKIVGGYNCEENSVPYQVSLN--SGYHFCGGSLINEQWVVSAGHCYKSRIQVRLGEHNIEV-LEGNEQFINAAKIIRHPQYDRKTLNNDIMLIKLSSRAVINARVSTISLPTAPPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKDSCQGDSGGPVVCNGQLQGVVSWG-DGCAQKNKPGVYTKVYNYVKWIKNTIAANS
2PSX Chain:A ((1-227))
-----------------------IINGSDCDMHTQPWQAALLLRPNQLYCGAVLVHPQWLLTAAHCRKKVFRVRLGHYSLSPVYESGQQMFQGVKSIPHPGYSHPGHSNDLMLIKLNRRIRPTKDVRPINVSSHCPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAYPRQIDDTMFCAGD-KAGRDSCQGDSGGPVVCNGSLQGLVSWGDYPCARPNRPGVYTNLCKFTKWIQETIQANS
General information:
TITO was launched using:
RESULT:
Template:
2PSX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108907 for 1903 contacts (-57.2/contact) +
2D Compatibility (PS) -24518 + (NN) -10730 + (LL) 1920
1D Compatibility (HY) -20000 + (ID) 5250
Total energy: -167485.0 ( -88.01 by residue)
QMean score : 0.674
(partial model without unconserved sides chains):
PDB file :
Tito_2PSX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PSX-query.scw
PDB file :
Tito_Scwrl_2PSX.pdb
: