Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTAPWVALALLWGSLCAGSGRGEAETRECIYYNANWELERTNQSGLERCEGEQDKRLHCYASWRNSSGTIELVKKGCWLDDFNCYDRQECVATEENPQVYFCCCEGNFCNERFTHLPEAGGPEVTYEPPPTAPTLLTVLAYSLLPIGGLSLIVLLAFWMYRHRKPPYGHVDIHEDPGPPPPSPLVGLKPLQLLEIKARGRFGCVWKAQLMNDFVAVKIFPLQD-------KQSWQSEREIFSTPGMKHENLLQFIAAEKRGSNLEVELWLITAFHDKGSLTDYLKG----NIITWNELCHVAETMSRGLSYLHEDVPWCRGEGHKPSIAHRDFKSKNVLLKSDLTAVLADFGLAVRFEPGKPPGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELVSRCKAADGPVDE-YMLPFEEEIGQH-PSLEELQEVVVHKKMRPTIKDHWLKHPGLAQLCVTIEECWDHDAEARLSAGCVEERVSLIRRSVNGTTSDCLVSLVTSVTNVDLPPKESSI |
2NRU Chain:A ((40-305)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKV--MAKCQHENLVELLGFSSDGD----DLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHEN-----------HHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRGEIT------PKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIED----YIDKKMNDAD------STSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMT------------------------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2NRU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -153940 for 2014 contacts (-76.4/contact) +
2D Compatibility (PS) -26427 + (NN) -4006 + (LL) 13892
1D Compatibility (HY) -18800 + (ID) 3950
Total energy: -193231.0 ( -95.94 by residue)
QMean score : 0.451
|
|
|