Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDDITSVSDQNFKSEVADYKGFVLVDFWAEWCRPCKNLMPRVEQLAKDKKGKIKICKFNIDGGAEVLSKYGIQSIPTLIIFQDGKEIARKIGTI--NDLSSWVDDEIS
3VFI Chain:A ((4-104))
------SLSDSDFQLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMDAEDAEKTMAELNIRTLPSLALFVDGMIREVFSGTMNKSDLRYWINNNI-
General information:
TITO was launched using:
RESULT:
Template:
3VFI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74505 for 705 contacts (-105.7/contact) +
2D Compatibility (PS) -10819 + (NN) -5245 + (LL) 488
1D Compatibility (HY) -6800 + (ID) 1400
Total energy: -98281.0 ( -139.41 by residue)
QMean score : 0.805
(partial model without unconserved sides chains):
PDB file :
Tito_3VFI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VFI-query.scw
PDB file :
Tito_Scwrl_3VFI.pdb
: