Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNDLETLKHIIDSSNRITFFTGAGVSVASGVPDFRSMGGLFDEISKDGLSPEYLLSRDYLEDDPEGFINFCHKRL-LFVDTKPNIVHDWIAKLERNQQSLGVITQNIDGLHSDAGSQHVDELHGTLNRFYCNACHKSYTKSDV----IDRTLKHCDNCGGAIRPDIVLYGEMLDQPTIIRALNKIEHADTLVVLGSSLVVQPAAGLISHF--KGDNLIIINKDRTPYDSDATLVIHDDMVSVVKSLMTE
1YC5 Chain:A ((2-242))
---KMKEFLDLLNESRLTVTLTGAGISTPSGIPDF-----------------QNVFDIDFFYSHPEEFYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEE
General information:
TITO was launched using:
RESULT:
Template:
1YC5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137901 for 1848 contacts (-74.6/contact) +
2D Compatibility (PS) -23431 + (NN) -2692 + (LL) 500
1D Compatibility (HY) -20000 + (ID) 4450
Total energy: -187974.0 ( -101.72 by residue)
QMean score : 0.471
(partial model without unconserved sides chains):
PDB file :
Tito_1YC5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YC5-query.scw
PDB file :
Tito_Scwrl_1YC5.pdb
: