Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKLILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESKQQWIPVYKSWRLNERHYGGLQGLNKDDARKEFGEEQVHIWRRSYDVKPPAETEEQREAYLADRRYNHLDKRMMPYSESLKDTLVRVIPFWTDHISQYLLDGQTVLVSAHGNSIRALIKYLEDVSDEDIINYEIKTGAPLVYELTDDLEVIDKYYL
1RII Chain:A ((4-224))
TGSLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEHDLLPDVLYTSLLRRAITTAHLALDSADRLWIPVRRSWRLNERHYGALQGLDKAETKARYGEEQFMAWRRSYDTPPPPIERGSQFSQDADPRYADIG--GGPLTECLADVVARFLPYFTDVIVGDLRVGKTVLIVAHGNSLRALVKHLDQMSDDEIVGLNIPTGIPLRYDLDSAMRPL-----
General information:
TITO was launched using:
RESULT:
Template:
1RII.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76479 for 1857 contacts (-41.2/contact) +
2D Compatibility (PS) -23541 + (NN) -4680 + (LL) 512
1D Compatibility (HY) -16800 + (ID) 5250
Total energy: -126238.0 ( -67.98 by residue)
QMean score : 0.391
(partial model without unconserved sides chains):
PDB file :
Tito_1RII.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RII-query.scw
PDB file :
Tito_Scwrl_1RII.pdb
: