Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
METRELKNGQIMMIRKATKEDSSNIITYLNEVAGETDYLSFGQGEFAFSIAEEAEYIEESDKNPGSVMLLCFIDDELASISQLIGHIKKRELHTSELAISIRKKYWGLGIGTICMEELIKYAKSSEYLKLIYLEVVTENKRAINLYKKFGFIEAGEIPALMQVDRRYLDVTMMYLVI
2VI7 Chain:A ((7-168))
----------TIRLERYSERHVEGLTALYNDPAVAR-QVLQ--M-PYQSVEQRRKRLHDS-DDDRLLILVALHQGDVIGSASLEQHPRIRRSHSGSIGMGVAVAWQGKGVGSRLLGELLDIADNWMNLRRVELTVYTDNAPALALYRKFGFETEGEMRDYAVRDGRFVDVYSMARL-
General information:
TITO was launched using:
RESULT:
Template:
2VI7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114718 for 1201 contacts (-95.5/contact) +
2D Compatibility (PS) -16850 + (NN) 1101 + (LL) 780
1D Compatibility (HY) -6000 + (ID) 1600
Total energy: -137287.0 ( -114.31 by residue)
QMean score : 0.394
(partial model without unconserved sides chains):
PDB file :
Tito_2VI7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VI7-query.scw
PDB file :
Tito_Scwrl_2VI7.pdb
: