Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKIRKIAIAALSVVVAGSLLTACGGGNSKSDDNGKTKVTFWAAPNPTQVKYWDEMAKAYEKENPDVTIEVSQMKESPSSEATIQSAIASK-TAPTMSENINRSFAAQLADSKAIVPLNDVKGLDDVVKERNMSETMDSWKFSDGNQYVLPVYSNPILFAWRLDTLKELGYDAPPKTYSEALEVGKKLKAKYPDKVLWAKGDLSDPTAWMRWFDFFPLYDAASKGNAFVE-D-GKLVADDKAGTELLTFMSELQKNKLLLAS------KATDPFETGTSIMADNGPWTFPNWDEKFPELKYNENYAITAPLVPDSMVNEENVATYADSKGVVMYAQATDKEKEAAMDFLKFVYNDDKNDLKFLETTNLIPARDDATENETFTAFFKENPELEVYAANVPYSIPAMDDAKYNDIQQIIGEEAWNPIVRGEKKPTKAWSDMKKAEDGVLQE |
| 3K01 Chain:A ((24-410)) | -------------------------------VELSGTVTFWDTSNEAEKATYQALAEGFEKEHPKVDVKYVNVPF-GEANAKFKNAAGGNSGAPDVMR-TEVAWVADFASIGYLAPLDGTPALDD--GSDHLPQAAASTRY-EGKTYAVPQVIDTLALFYNKELLTKAGVE-VPGSVAELKTAAAEITEKTGA---TGLYLRGDDPY---W--FL-PYLYGEGG-DLVDEKNKTVTVDDEAGVRAYRVIKDLVDSKAAITDASDGWNNMQNAFKSGKVAMMVNGPWAIEDVKAGARFK-DAGNLGVAPVPAGSAGQ-----GSPQGGWNLSVYAGSKN--LDASYAFVKYMSSAK-VQQQTTEKLSLLPTRTSVYEVPSVAD----NEMVKFFKPAVDKAVERPWIAEGNALFEPIRL-QMANVLSGETSPDEAAANTGDAYRKLLKD |
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General information:
TITO was launched using:
| RESULT:
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Template: 3K01.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -69390 for 3389 contacts (-20.5/contact) +
2D Compatibility (PS) -40766 + (NN) -21145 + (LL) 4284
1D Compatibility (HY) -11200 + (ID) 3600
Total energy: -141817.0 ( -41.85 by residue)
QMean score : 0.438
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