Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTMDDIVREGHPALREVATEVTFPLSDEEKKLGRDMLEFLINSQDEDLAEKYGLRGGVGIAAPQLAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSERVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNGIMFYDHINKENPSYLPPDVDVFG
1RL4 Chain:A ((10-170))
-----KIVKYPDPILRRRSEEVT-NFDDNLKRVVRKMFDIM--YE----------SKGIGLSAPQVNISKRIIVWN----------RIFINPSIVEQSLV--KLKLIEGCLSFPGIEG-KVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNE--
General information:
TITO was launched using:
RESULT:
Template:
1RL4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59957 for 1136 contacts (-52.8/contact) +
2D Compatibility (PS) -15775 + (NN) -3850 + (LL) 2004
1D Compatibility (HY) -12000 + (ID) 2450
Total energy: -92028.0 ( -81.01 by residue)
QMean score : 0.368
(partial model without unconserved sides chains):
PDB file :
Tito_1RL4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RL4-query.scw
PDB file :
Tito_Scwrl_1RL4.pdb
: