Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKIIIATANKGKAKEFEKIFAKFNIEVATLADFPEIGEIEETGTTFAENAALKAETVASVLNQTVIADDSGLIVDALDGAPGVYSARYAGVAHDDAKNNEKLLKNLEGVEPDKRTARFHCTLAVATPSEKTSFYTGEVEGVIAEQLCGTN-GFGYDPLFFLPEFGLTMAEIPAEKKNEISHRANAIKQLEKDLVEVVEKVTKK
1B78 Chain:A ((10-193))
--KIYFATGNPNKIKEANIILKDLKDVEIEQIKI----SYPEIQGTLEEVAEFGAKWVYNILKKPVIVEDSGFFVEALNGFPGTYSKFVQET-----IGNEGILKLLEG--KDNRNAYFKTVIGYCDE-NGVRLFKGIVKGRVSEEIRSKGYGFAYDSIFIPEEEERTFAEMTTEEKSQISHRKKAFEEFKKFLLDRI------
General information:
TITO was launched using:
RESULT:
Template:
1B78.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83663 for 1435 contacts (-58.3/contact) +
2D Compatibility (PS) -20010 + (NN) -11343 + (LL) 1164
1D Compatibility (HY) -12800 + (ID) 3100
Total energy: -129752.0 ( -90.42 by residue)
QMean score : 0.480
(partial model without unconserved sides chains):
PDB file :
Tito_1B78.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B78-query.scw
PDB file :
Tito_Scwrl_1B78.pdb
: