Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNGKQVMVGGLSLLLVGAGLGAFGSTAQAATDDASVMPDISNKQVLVGYWHSWKSSGKDGYQQGTSADIALKDTPKAYNVVDVSFMKGDGVNRIPTFKPVG-----INDSDFRAQVGALNKEGRAVLLALGGADGHVELKA-GDEEAFANEIIRQVETYGFDGLDIDLEQSAITAGDNKTVIPAALKIVKDHYKAEGKNFLITMAPEFPYLKP-GSAYESYLTSLANYYDYIAPQLYNQGGDGVWVDETNQWIAQNNDTLKESFLYYMADSFINGTRGYLKIPANKFVFGLPANVDAAATGYVTDPQIVKNVFTRLQ-----------AKGTPVKGIMTWSVNWDAGKNKAGVPYNNSFSNAYGPIVGTK |
| 3EBV Chain:A ((3-291)) | -----------------------------------------LKHAVTGYWQNFNNGA---------TVQKISDVPSAYDIIAVAFADATTTPGAVTFNLDSAGLGGYTVDQFKADVRAKQAAGKKVIISVGGEKGTVSVNSSASATNFANSVYSVMREYGFDGVDIDLENGLN-----PTYMTQALRALSAKAG---PDMILTMAPQTIDMQSTQGGYFQTALNVKDILTVVN-MQYYNSGT--MLGCD-GKVYA---QGTVDFL----T-ALACIQLEGGLAPSQVGLGLPASTRAAGGGYVSPS-VVNAALDCLTKATNCGSFKPSKTYPDLRGAMTWSTNWDATAG---NAWSNSVGAHV------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3EBV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -140591 for 2409 contacts (-58.4/contact) +
2D Compatibility (PS) -28068 + (NN) -6934 + (LL) 2316
1D Compatibility (HY) -16400 + (ID) 3450
Total energy: -193127.0 ( -80.17 by residue)
QMean score : 0.521
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