Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLVLIRHGQSEWNKLNLFTGWHDVDLSQEGVVEAMTAGKRIKEAGLEFDVAFTSVLTRAIKTLNYVLEESDQMWVPVHKSWRLNERHYGALQGLNKQETAEKYGADQVQKWRRSYDTLPPLLEENDERQAKNDRRYQLLDTHAIPSGENLKVTLERVIPYWMDTIAPEIKEGRRVVIAAHGNSLRALVKFLEGISDDEIMDLEIPTGVPLVYELNADLKPVNKYYLDK
1RII Chain:A ((5-225))
GSLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEHDLLPDVLYTSLLRRAITTAHLALDSADRLWIPVRRSWRLNERHYGALQGLDKAETKARYGEEQFMAWRRSYDTPPPPIERGSQFSQDADPRYADI--GGGPLTECLADVVARFLPYFTDVIVGDLRVGKTVLIVAHGNSLRALVKHLDQMSDDEIVGLNIPTGIPLRYDLDSAMRPLV------
General information:
TITO was launched using:
RESULT:
Template:
1RII.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75934 for 1847 contacts (-41.1/contact) +
2D Compatibility (PS) -24026 + (NN) -7867 + (LL) 388
1D Compatibility (HY) -19600 + (ID) 5600
Total energy: -132639.0 ( -71.81 by residue)
QMean score : 0.536
(partial model without unconserved sides chains):
PDB file :
Tito_1RII.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RII-query.scw
PDB file :
Tito_Scwrl_1RII.pdb
: