Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LRRLDRFNAPDDTVNTLFQVYKTISFWKVLKNTLVIEFGRFFPWMGGKRKIYRVCLGMEIGEKTAIAYKVMPDLFFPEKILIGENSIIGYHTTILTHEYLLSE-------YRVGEVVIGRDVMVGANVTILPGTVIGDGAVIAAGAVVSVDVPAGSFAYGNPLIIKEKATLT
3NZ2 Chain:A ((74-187))
------------------------------------------------------GKTIRIGDHTFINMNVVML--DGAPITIGDHVLIGPSTQFYTASHSLDYRRRQAWETICKPIVIEDDVWIGGNVVINQGVTIGARSVVAANSVVNQDVPPDTLVGGTPARILRSLK--
General information:
TITO was launched using:
RESULT:
Template:
3NZ2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88411 for 798 contacts (-110.8/contact) +
2D Compatibility (PS) -11925 + (NN) -3371 + (LL) 4688
1D Compatibility (HY) -6400 + (ID) 1750
Total energy: -107169.0 ( -134.30 by residue)
QMean score : 0.443
(partial model without unconserved sides chains):
PDB file :
Tito_3NZ2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NZ2-query.scw
PDB file :
Tito_Scwrl_3NZ2.pdb
: