Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLENDIKKVLYSEEDIILKTKELGAKLTADYAGKNPLLVGVLKGSVPFMAELLKHIDTHVEIDFMVVSSYHGGTTSSGEVKILKDVDTNIEGRDVIFIEDIIDTGRTLKYLRDMFKYRQANSVKVATLFDKPEGRLVDIDADYVCYDIPNEFIVGFGLDYAENYRNLPYVGVLKEEIYSK
2GEB Chain:A ((9-184))
--MEDIEEILITEEQLKAKVKELGEMITRDYEGKDLVLIGVLKGAIMFMSGLSRAIDLPLSIDFLAVSSYGSSTKSSGIVKIIKDHDIDIEGKDVLIVEDIIDSGLTLAYLRETLLGRKPRSLKICTILDKPERREADVKVDYCGFKIPDKFVVGYGIDYAEKYRNLPFIGVLKPELY--
General information:
TITO was launched using:
RESULT:
Template:
2GEB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123113 for 1366 contacts (-90.1/contact) +
2D Compatibility (PS) -19312 + (NN) -7565 + (LL) 420
1D Compatibility (HY) -20400 + (ID) 4600
Total energy: -174570.0 ( -127.80 by residue)
QMean score : 0.604
(partial model without unconserved sides chains):
PDB file :
Tito_2GEB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GEB-query.scw
PDB file :
Tito_Scwrl_2GEB.pdb
: